adegenet (Q19176)
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Exploratory Analysis of Genetic and Genomic Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | adegenet |
Exploratory Analysis of Genetic and Genomic Data |
Statements
expanded from: GPL (≥ 2) (English)
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6 February 2025
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Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
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Identifiers
8 February 2023
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