Multiscale Simulation of Stochastic Reaction-Diffusion Networks (Q4555225)

scientific article; zbMATH DE number 6981321

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English	Multiscale Simulation of Stochastic Reaction-Diffusion Networks	scientific article; zbMATH DE number 6981321

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instance of

scholarly article

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title

Multiscale Simulation of Stochastic Reaction-Diffusion Networks (English)

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Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology

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publication date

19 November 2018

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zbMATH Keywords

stochastic reaction-diffusion networks

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molecular systems biology

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describes a project that uses

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MaRDI publication profile

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full work available at URL

https://doi.org/10.1007/978-3-319-62627-7_3

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cites work

A comparison of bimolecular reaction models for stochastic reaction-diffusion systems

0 references

Multilevel Monte Carlo for Continuous Time Markov Chains, with Applications in Biochemical Kinetics

0 references

Product-form stationary distributions for deficiency zero chemical reaction networks

0 references

Parallelization, Processor Communication and Error Analysis in Lattice Kinetic Monte Carlo

0 references

Asymptotic analysis of multiscale approximations to reaction networks

0 references

Adaptive mesh refinement for stochastic reaction-diffusion processes

0 references

Mesoscopic Modeling of Stochastic Reaction-Diffusion Kinetics in the Subdiffusive Regime

0 references

On Nonobtuse Simplicial Partitions

0 references

Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems

0 references

Pathwise Error Bounds in Multiscale Variable Splitting Methods for Spatial Stochastic Kinetics

0 references

Q3680030

0 references

Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation

0 references

A first-passage kinetic Monte Carlo algorithm for complex diffusion-reaction systems

0 references

Hybrid framework for the simulation of stochastic chemical kinetics

0 references

Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales

0 references

Computing the moments of high dimensional solutions of the master equation

0 references

Q3623621

0 references

Spectral approximation of solutions to the chemical master equation

0 references

Parallel in Time Simulation of Multiscale Stochastic Chemical Kinetics

0 references

Strong Convergence for Split-Step Methods in Stochastic Jump Kinetics

0 references

Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes

0 references

Quality Triangulations with Locally Optimal Steiner Points

0 references

Stochastic reaction-diffusion kinetics in the microscopic limit

0 references

The existence and uniqueness of steady states for a class of chemical reaction networks

0 references

A hierarchy of approximations of the master equation scaled by a size parameter

0 references

An adaptive algorithm for simulation of stochastic reaction-diffusion processes

0 references

Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations

0 references

Multiscale Reaction-Diffusion Algorithms: PDE-Assisted Brownian Dynamics

0 references

A stochastic analysis of first-order reaction networks

0 references

Jump-Diffusion Approximation of Stochastic Reaction Dynamics: Error Bounds and Algorithms

0 references

Handbook of stochastic methods for physics, chemistry and the natural sciences.

0 references

Q4002472

0 references

Q4649584

0 references

Markovian dynamics on complex reaction networks

0 references

A solver for the stochastic master equation applied to gene regulatory networks

0 references

Incorporating Active Transport of Cellular Cargo in Stochastic Mesoscopic Models of Living Cells

0 references

Flexible single molecule simulation of reaction-diffusion processes

0 references

Coupled Mesoscopic and Microscopic Simulation of Stochastic Reaction-Diffusion Processes in Mixed Dimensions

0 references

The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target

0 references

Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations

0 references

An Adaptive Wavelet Method for the Chemical Master Equation

0 references

Solving the chemical master equation for monomolecular reaction systems analytically

0 references

Error Bound for Piecewise Deterministic Processes Modeling Stochastic Reaction Systems

0 references

Separation of time-scales and model reduction for stochastic reaction networks

0 references

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces

0 references

Weakened acute type condition for tetrahedral triangulations and the discrete maximum principle

0 references

Solutions of ordinary differential equations as limits of pure jump markov processes

0 references

Strong approximation theorems for density dependent Markov chains

0 references

Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions

0 references

Simulation of stochastic diffusion via first exit times

0 references

Stochastic approach to chemical kinetics

0 references

Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models

0 references

The random walk's guide to anomalous diffusion: A fractional dynamics approach

0 references

Modeling Subdiffusion Using Reaction Diffusion Systems

0 references

Multilevel hybrid Chernoff tau-leap

0 references

A Multilevel Adaptive Reaction-splitting Simulation Method for Stochastic Reaction Networks

0 references

A multiple time interval finite state projection algorithm for the solution to the chemical master equation

0 references

Using Gene Expression Noise to Understand Gene Regulation

0 references

Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems

0 references

Approximation and inference methods for stochastic biochemical kinetics—a tutorial review

0 references

An analysis of operator splitting techniques in the stiff case

0 references

On the Construction and Comparison of Difference Schemes

0 references

Stochastic simulation of coupled reaction-diffusion processes

0 references

Influence of the nuclear membrane, active transport, and cell shape on the Hes1 and p53-Mdm2 pathways: insights from spatio-temporal modelling

0 references

Q4360234

0 references

Q2758041

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Identifiers

zbMATH Open document ID

1401.92091

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DOI

10.1007/978-3-319-62627-7_3

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Mathematics Subject Classification ID

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Sitelinks

Mathematics(1 entry)

mardi Publication:4555225