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vcfR - MaRDI portal

vcfR (Q27941)

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Manipulate and Visualize VCF Data
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English
vcfR
Manipulate and Visualize VCF Data

    Statements

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    1.14.0
    10 February 2023
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    1.0.0
    22 February 2016
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    1.1.0
    26 May 2016
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    1.2.0
    5 December 2016
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    1.3.0
    8 December 2016
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    1.4.0
    7 January 2017
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    1.5.0
    18 May 2017
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    1.6.0
    8 December 2017
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    1.7.0
    8 February 2018
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    1.8.0
    17 April 2018
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    1.9.0
    10 January 2020
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    1.10.0
    6 February 2020
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    1.11.0
    5 June 2020
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    1.12.0
    1 September 2020
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    1.13.0
    16 July 2022
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    1.15.0
    8 December 2023
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    8 December 2023
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    Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.
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