Learning interpretable SVMs for biological sequence classification

DOI10.1007/11415770_30MaRDI QIDQ5706885zbMATH OpenOpenAlexFDO

Authors Sören Sonnenburg, C. Schäfer, Gunnar Rätsch

Publication date 23 November 2005

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/b135594

zbMATH Keywords

Interpretation of SVM resultsMultiple Kernel LearningSplice Site PredictionString KernelSupport Vector MachineWeighted Degree Kernel

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Semi-infinite programming (90C34) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

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Cited in

(12)

• Classification of splice-junction sequences via weighted position specific scoring approach
• Online primal-dual learning for a data-dependent multi-kernel combination model with multiclass visual categorization applications
• Analytic center cutting plane method for multiple kernel learning
• Learning wind fields with multiple kernels
• SVM classification of human intergenic and gene sequences
• KIS: an automated attribute induction method for classification of DNA sequences
• Large scale multiple kernel learning
• New methods for splice site recognition
• Splice site prediction using support vector machines with context-sensitive kernel functions
• All fingers are not the same: handling variable-length sequences in a discriminative setting using conformal multi-instance kernels
• Potential Functions for Signals and Symbolic Sequences
• A high-order norm-product regularized multiple kernel learning framework for kernel optimization

Describes a project that uses

Uses Software

• SHOGUN
• SVMlight

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