lme4

swMATH4515CRANlme4MaRDI QIDQ16687FDOQ16687

Linear Mixed-Effects Models using 'Eigen' and S4

Martin Maechler, Douglas M Bates, Steven Walker, Ben Bolker

Last update: 5 November 2023

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 1.1-32, 1.1-33, 0.2-1, 0.2-2, 0.2-3, 0.2-4, 0.3-1, 0.3-2, 0.3-3, 0.3-4, 0.3-5, 0.3-6, 0.3-7, 0.4-3, 0.4-4, 0.4-7, 0.5-2, 0.6-1, 0.6-2, 0.6-3, 0.6-4, 0.6-5, 0.6-6, 0.6-7, 0.6-9, 0.6-10, 0.6-11, 0.6-12, 0.8-1, 0.8-2, 0.8-3, 0.9-1, 0.9-2, 0.95-1, 0.95-3, 0.95-4, 0.95-5, 0.95-6, 0.95-7, 0.95-8, 0.95-9, 0.95-10, 0.96-1, 0.98-1, 0.995-1, 0.995-2, 0.9975-0, 0.9975-1, 0.9975-3, 0.9975-4, 0.9975-5, 0.9975-6, 0.9975-7, 0.9975-8, 0.9975-9, 0.9975-10, 0.9975-11, 0.9975-12, 0.9975-13, 0.99875-0, 0.99875-1, 0.99875-2, 0.99875-4, 0.99875-5, 0.99875-6, 0.99875-7, 0.99875-8, 0.99875-9, 0.999375-16, 0.999375-17, 0.999375-18, 0.999375-19, 0.999375-20, 0.999375-21, 0.999375-22, 0.999375-23, 0.999375-24, 0.999375-25, 0.999375-26, 0.999375-27, 0.999375-28, 0.999375-30, 0.999375-31, 0.999375-32, 0.999375-33, 0.999375-34, 0.999375-35, 0.999375-36, 0.999375-37, 0.999375-38, 0.999375-39, 0.999375-40, 0.999375-41, 0.999375-42, 0.999999-0, 0.999999-2, 1.0-4, 1.0-5, 1.0-6, 1.1-5, 1.1-6, 1.1-7, 1.1-8, 1.1-9, 1.1-10, 1.1-11, 1.1-12, 1.1-13, 1.1-14, 1.1-15, 1.1-16, 1.1-17, 1.1-18-1, 1.1-19, 1.1-20, 1.1-21, 1.1-23, 1.1-25, 1.1-26, 1.1-27.1, 1.1-27, 1.1-28, 1.1-29, 1.1-30, 1.1-31, 1.1-34, 1.1-35, 1.1-35.1

Official website: http://cran.r-project.org/web/packages/lme4/

Source code repository: https://github.com/cran/lme4

Description

Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".

Cited In (only showing first 100 items - show all)

• Modern psychometrics with R
• Growth modeling. Structural equation and multilevel modeling approaches
• Group kernels for Gaussian process metamodels with categorical inputs
• An \(R^2\) statistic for fixed effects in the generalized linear mixed model
• Assessing Bayes Factor Surfaces Using Interactive Visualization and Computer Surrogate Modeling
• Dispersion parameter extension of precise generalized linear mixed model asymptotics
• Fitting monotone polynomials in mixed effects models
• Joint modeling for longitudinal covariate and binary outcome via h-likelihood
• A monotone frequentist measure of evidence for testing variance components in linear mixed models
• Augmented weighted estimators dealing with practical positivity violation to causal inferences in a random coefficient model
• Evaluating machine learning methods for estimation in online surveys with superpopulation modeling
• Beyond Prediction: A Framework for Inference With Variational Approximations in Mixture Models
• MM Algorithms for Variance Components Models
• Fitting logistic multilevel models with crossed random effects via Bayesian Integrated Nested Laplace Approximations: a simulation study
• Bivariate correlation coefficients in family-type clustered studies
• A comparison study on modeling of clustered and overdispersed count data for multiple comparisons
• Optimal estimator for logistic model with distribution-free random intercept
• Foundations of data analysis with R. An application oriented introduction.
• Clinical Trial Data Analysis Using R and SAS, Second Edition
• Bayesian estimation and uncertainty quantification in models of urea hydrolysis byE. colibiofilms
• Evaluation and prediction under hierarchical and bivariate copula models for seat belt use data
• What if versus probabilistic scenarios: a neuroscientific analysis
• A fast approximate EM algorithm for joint models of survival and multivariate longitudinal data
• Semiparametric empirical best prediction for small area estimation of unemployment indicators
• Spherical radial approximation for nested mixed effects models
• Statistics and Probability with Applications for Engineers and Scientists using MINITAB, R and JMP
• Multilevel modeling using R
• Quasi-complete separation in random effects of binary response mixed models
• Symbolic Formulae for Linear Mixed Models
• Investigating heterogeneity in meta-analysis of studies with rare events. Estimating the amount of heterogeneity
• Estimation of effect heterogeneity in rare events meta-analysis
• A Bayesian Analysis of Synchronous Distance Learning versus Matched Traditional Control in Graduate Biostatistics Courses
• Book review of: A. Hector, The new statistics with R. An introduction for biologists
• A robustness evaluation of Bayesian tests for longitudinal data
• Statistical regression modeling with R. Longitudinal and multi-level modeling
• Bayesian hierarchical models with conjugate full-conditional distributions for dependent data from the natural exponential family
• Multilevel modeling using R
• Using intraclass correlation coefficients to quantify spatial variability of catastrophe model errors
• Confidence regions near singular information and boundary points with applications to mixed models
• Regularization method for predicting an ordinal response using longitudinal high-dimensional genomic data
• Discovering transgenic elite events: using~information from early screening trials for improving experimental design
• Bayesian networks. With examples in R
• Optimal tests for random effects in linear mixed models
• Title not available (Why is that?)
• Streamlined variational inference for higher level group-specific curve models
• A Lasso and a regression tree mixed-effect model with random effects for the level, the residual variance, and the autocorrelation
• A systematic study into the factors that affect the predictive accuracy of multilevel VAR(1) models
• Two filtering methods of forecasting linear and nonlinear dynamics of intensive longitudinal data
• Logistic Regression With Multiple Random Effects: A Simulation Study of Estimation Methods and Statistical Packages
• Maximum likelihood estimation and parameter interpretation in elliptical mixed logistic regression
• Mixed-effect models for longitudinal responses with different types of dropout: an application to the Leiden 85-plus study
• Modeling intensive polytomous time-series eye-tracking data: a dynamic tree-based item response model
• Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
• Mantel-Haenszel estimators of odds ratios for stratified dependent binomial data
• An adaptation of pseudo-score confidence interval method for linear mixed models
• Confidence and varieties of bias
• Panel-based stratified cluster sampling and analysis for photovoltaic outdoor measurements
• On a logistic regression model with random intercept: diagnostic analytics, simulation and biological application
• Statistical considerations for crowdsourced perceptual ratings of human speech productions
• Advanced statistics for the behavioral sciences. A computational approach with R
• Linear mixed models. A practical guide using statistical software. With contributions from Brenda W. Gillespie
• Bayesian semiparametric functional mixed models for serially correlated functional data, with application to glaucoma data
• Comparison of different computational implementations on fitting generalized linear mixed-effects models for repeated count measures
• Fitting double hierarchical models with the integrated nested Laplace approximation
• Component-Based Regularization of Multivariate Generalized Linear Mixed Models
• Teaching Statistics at Google-Scale
• Applied statistics. Theory and problem solutions with R
• Estimating variances in time series kriging using convex optimization and empirical BLUPs
• Fitting a deeply nested hierarchical model to a large book review dataset using a moment-based estimator
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• A sparse hierarchical Bayesian model for detecting relevant antigenic sites in virus evolution
• On the effect of ignoring correlation in the covariates when fitting linear mixed models
• A graphical model selection tool for mixed models
• An Asynchronous Distributed Expectation Maximization Algorithm for Massive Data: The DEM Algorithm
• Longitudinal Principal Component Analysis With an Application to Marketing Data
• Gene-based association testing of dichotomous traits with generalized functional linear mixed models using extended pedigrees: applications to age-related macular degeneration
• Testing random effects in linear mixed models: another look at the F-test (with discussion)
• Fast and accurate binary response mixed model analysis via expectation propagation
• BiMM tree: a decision tree method for modeling clustered and longitudinal binary outcomes
• Comparing alternating logistic regressions to other approaches to modelling correlated binary data
• Generalized Linear Mixed Models With Crossed Effects and Unit-specific Survey Weights
• Linear mixed models with endogenous covariates: modeling sequential treatment effects with application to a mobile health study
• Functional random effects modeling of brain shape and connectivity
• Online estimation of individual-level effects using streaming shrinkage factors
• Extending the linear model with R. Generalized linear, mixed effects and nonparametric regression models.
• Multi-level block designs for comparative experiments
• Scalable logistic regression with crossed random effects
• Computation and application of generalized linear mixed model derivatives using \textit{lme4}
• Autoregressive generalized linear mixed effect models with crossed random effects: an application to intensive binary time series eye-tracking data
• Backfitting for large scale crossed random effects regressions
• A fast regression via SVD and marginalization
• Estimating school effectiveness with student growth percentile and gain score models
• Joint modeling of longitudinal and time-to-event data on multivariate protein biomarkers
• Model fit criteria curve behaviour in class enumeration – a diagnostic tool for model (mis)specification in longitudinal mixture modelling
• Programming with R
• Regularized target encoding outperforms traditional methods in supervised machine learning with high cardinality features
• Discriminant analysis for longitudinal data with application in medical diagnostics.
• Parameter estimation of Poisson generalized linear mixed models based on three different statistical principles: a simulation study
• GLMMRR
• mixAK

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