Logical modelling, some recent methodological advances illustrated

DOI10.1007/978-3-031-65887-7_1MaRDI QIDQ6637834zbMATH OpenFDO

Authors Claudine Chaouiya, P. T. Monteiro, Elisabeth Remy

Publication date 13 November 2024

Full work available at URL https://doi.org/10.1007/978-3-031-65887-7_1

zbMATH Keywords

logical modelsmodel inferencemodel revisionreachability propertiesregulatory disease networks

Mathematics Subject Classification ID

Boolean functions (06E30) Dynamical systems in biology (37N25) Neural networks for/in biological studies, artificial life and related topics (92B20) Neural biology (92C20) Cell biology (92C37)

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Cites work

• Learning Boolean logic models of signaling networks with ASP
• Local negative circuits and cyclic attractors in Boolean networks with at most five components
• ModRev -- model revision tool for Boolean logical models of biological regulatory networks
• Repairing inconsistent answer set programs using rules of thumb: a gene regulatory networks case study
• Stable states of Boolean regulatory networks composed over hexagonal grids
• Synthesis and simulation of ensembles of Boolean networks for cell fate decision

Cited in

(3)

• A logical framework for modelling breast cancer progression
• Beyond Boolean networks: new tools for the steady state analysis of multivalued networks
• \textsc{pyModRev}: a Python tool for model revision of Boolean networks

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