\textsc{pyModRev}: a Python tool for model revision of Boolean networks

DOI10.1007/978-3-032-30870-2_4MaRDI QIDQ7411996zbMATH OpenFDO

Authors P. T. Monteiro, Filipe Gouveia

Publication date 2027

Full work available at URL https://doi.org/10.1007/978-3-032-30870-2_4

zbMATH Keywords

biological regulatory networkslogical modelsmodel revision

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to biology (92-04) Systems biology, networks (92C42) Networked control (93B70) Boolean control/observation systems (93C29)

Cites work

• BoNesis: a Python-based declarative environment for the verification, reprogramming, and synthesis of most permissive Boolean networks
• Computation of immediate neighbours of monotone Boolean functions
• Logical modelling, some recent methodological advances illustrated
• ModRev -- model revision tool for Boolean logical models of biological regulatory networks
• Multi-shot ASP solving with clingo
• Repairing inconsistent answer set programs using rules of thumb: a gene regulatory networks case study

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