longreadvqs

Last update 28 April 2026

Copyright license GNU General Public License, version 3.0

Software version identifier PACKAGES.rds, 0.1.2, 0.1.3, 0.1.4, 0.1.5

Description

Performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2026) <doi:10.1371/journal.pcbi.1014208>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.

Cites work

QoALa: A comprehensive workflow for viral quasispecies diversity comparison using long-read sequencing data

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