MIB: using mutual information for biclustering gene expression data

DOI10.1016/J.PATCOG.2010.03.002MaRDI QIDQ975174zbMATH OpenOpenAlexFDO

Authors Neelima Gupta, Seema Aggarwal

Publication date 8 June 2010

Published in Pattern Recognition (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.patcog.2010.03.002

zbMATH Keywords

mutual informationbiclusteringgene expression dataGO term and transcription factor binding site

Mathematics Subject Classification ID

Pattern recognition, speech recognition (68T10) Nonnumerical algorithms (68W05)

Recommendations

• MIC: Mutual Information Based Hierarchical Clustering
• scientific article; zbMATH DE number 1849132
• A bioinformatic implementation of mutual information as a distance measure for identification of clusters of variables
• The penalized biclustering model and related algorithms
• Random walk biclustering for microarray data

Cites work

• scientific article; zbMATH DE number 51537 (Why is no real title available?)
• A generalized maximum entropy approach to Bregman co-clustering and matrix approximation
• Information-based clustering
• MIB: using mutual information for biclustering gene expression data
• Self-organizing maps.

Cited in

(11)

• MIC: Mutual Information Based Hierarchical Clustering
• Detecting coupling directions with transcript mutual information: a comparative study
• Multistage mutual information for informative gene selection
• MIB: using mutual information for biclustering gene expression data
• Mutual information, phi-squared and model-based co-clustering for contingency tables
• scientific article; zbMATH DE number 1849132 (Why is no real title available?)
• A bioinformatic implementation of mutual information as a distance measure for identification of clusters of variables
• Redefinition of mutual information in the fuzzy sets framework for computational genomics
• Mining order-preserving submatrices from probabilistic matrices
• A biclustering approach based on factor graphs and the max-sum algorithm
• Co-clustering algorithms for distributional data with automated variable weighting

Describes a project that uses

Uses Software

• AmiGO
• BicAT

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