Microscopic description of DNA thermal denaturation

DOI10.1016/J.AMC.2019.05.001MaRDI QIDQ2279581zbMATH OpenOpenAlexWikidataFDO

Authors Mateusz Dȩbowski, Zuzanna Szymańska, Mirosław Lachowicz

Publication date 13 December 2019

Published in Applied Mathematics and Computation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.amc.2019.05.001

zbMATH Keywords

integro-differential equationsDNA thermal denaturationstacking interactionsmicroscopic model

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Integro-partial differential equations (35R09) Integro-ordinary differential equations (45J05)

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Cites work

• scientific article; zbMATH DE number 3649800 (Why is no real title available?)
• A class of individual-based models
• A microscopic model of redistribution of individuals inside an `elevator'
• Continuous Markov semigroups and stability of transport equations
• Exact Dynamical Systems and the Frobenius-Perron Operator
• Individually-based Markov processes modeling nonlinear systems in mathematical biology
• Markov operators: applications to diffusion processes and population dynamics
• Methods of small parameter in mathematical biology
• Modeling DNA thermal denaturation at the mesoscopic level
• Modelling DNA at the mesoscale: a challenge for nonlinear science?
• Nonlinear dynamics and statistical physics of DNA
• Observation and control for operator semigroups
• Optimal control for mathematical models of cancer therapies. An application of geometric methods
• Optimal response to chemotherapy for a mathematical model of tumor-immune dynamics

Cited in

(13)

• A probabilistic study of DNA denaturation
• Twist versus nonlinear stacking in short DNA molecules
• Bubbles, clusters and denaturation in genomic DNA: modeling, parametrization, efficient computation
• DNA denaturation in the rodlike polyelectrolyte model
• A statistical model of DNA denaturation
• Fractal aggregation of DNA after thermal denaturation
• A Fokker-Planck framework in the PolyC:PolyG denaturation
• Thermodynamics of a nonlinear model for DNA denaturation
• Multiple timescales in a model for DNA denaturation dynamics
• On a dispersive model for the unzipping of double-stranded DNA molecules
• Strand separation in negatively supercoiled DNA
• Spectral methods for solving integro-differential equations and bibiliometric analysis
• scientific article; zbMATH DE number 5977125 (Why is no real title available?)

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