moc.gapbk

MaRDI QIDQ7377881CRANFDO

Authors Jorge Parraga-alava, Marcio Dorn, Mario Inostroza-Ponta

Last update 14 May 2026

Copyright license GNU General Public License, version 2.0

Software version identifier PACKAGES.rds, 0.1.0, 0.1.1, 0.1.3, 0.2.1

Description

Implements the Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge ('MOC-GaPBK') proposed by Parraga-Alava and others (2018) <doi:10.1186/s13040-018-0178-4>. The algorithm performs gene clustering using 'NSGA-II' as the underlying multi-objective evolutionary engine, together with Path-Relinking and Pareto Local Search as intensification and diversification strategies. Two versions of the Xie-Beni validity index are used as objective functions, one per distance matrix, so that prior biological knowledge can be incorporated through the second matrix.

Cites work

• A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies

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