Modelling conjugation with stochastic differential equations

DOI10.1016/J.JTBI.2009.11.011MaRDI QIDQ1715294zbMATH OpenOpenAlexWikidataFDO

Authors K. R. Philipsen, H. Hasman, Lasse Engbo Christiansen, Henrik Madsen

Publication date 4 February 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2009.11.011

zbMATH Keywords

AIChidden Markov modelmathematical modellingresistancehorizontal gene transferSDElikelihood-ratio test\textit{Enterococcus faecium}CTSM

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Cell biology (92C37)

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Cites work

• An algorithmic introduction to numerical simulation of stochastic differential equations
• Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution
• Parameter estimation in stochastic grey-box models.
• Persistence in density dependent stochastic populations
• Static recipient cells as reservoirs of antibiotic resistance during antibiotic therapy

Cited in

(4)

• Stochastic modeling of in vitro bactericidal potency
• A stochastic formulation of the Gompertzian growth model for \textit{in vitro} bactericidal kinetics: parameter estimation and extinction probability
• The effect of competition and horizontal trait inheritance on invasion, fixation, and polymorphism
• Development of a restricted state space stochastic differential equation model for bacterial growth in rich media

Describes a project that uses

Uses Software

• PSM

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