Modelling the biomechanical properties of DNA using computer simulation

DOI10.1098/RSTA.2006.1906MaRDI QIDQ5301909zbMATH OpenOpenAlexWikidataFDO

Authors Sarah A. Harris

Publication date 20 January 2009

Published in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1098/rsta.2006.1906

zbMATH Keywords

biopolymersDNAmolecular dynamics

Mathematics Subject Classification ID

Biophysics (92C05) Biomechanics (92C10) Biochemistry, molecular biology (92C40)

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• A combined wormlike-chain and bead model for dynamic simulations of long linear DNA
• Thermodynamic approach to nano-properties of cell membrane
• Transport processes and irreversible thermodynamics analysis in tumoral systems
• Statistical mechanical modeling of a DNA nanobiostructure at the base-pair level
• Brownian dynamics simulation of nucleosome formation and disruption under stretching
• Computational and numerical simulations for the deoxyribonucleic acid (DNA) model
• DNA strand break: Structural and electrostatic properties studied by molecular dynamics simulation
• Numerical investigation of the micromechanical behavior of DNA immersed in a hydrodynamic flow
• scientific article; zbMATH DE number 1301596 (Why is no real title available?)
• Modelling the DNA topology: the effect of the loop bending on G-quadruplex stability
• A BIonic model for exchanging waves between water and DNA
• Modelling DNA loops using continuum and statistical mechanics One contribution of 16 to a Theme ‘The mechanics of DNA’
• Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS
• scientific article; zbMATH DE number 956625 (Why is no real title available?)
• Numerical simulation of biological base pairs considering geometric and energetic criteria

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