Modified splitting and composition methods by phase-fitting for simulating biological oscillators

MaRDI QIDQ3383939zbMATH OpenFDO

Authors Julius Osato Ehigie, S. A. Okunuga

Publication date 16 December 2021

Full work available at URL https://ojs.ictp.it/jnms/index.php/jnms/article/view/547

zbMATH Keywords

oscillatoryphase-fittingbiological oscillatorssplitting and composition methodsgenetic regulatory systems

Mathematics Subject Classification ID

Mathematical modeling or simulation for problems pertaining to biology (92-10) Multistep, Runge-Kutta and extrapolation methods for ordinary differential equations (65L06) Numerical methods for initial value problems involving ordinary differential equations (65L05)

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Cites work

• scientific article; zbMATH DE number 819507 (Why is no real title available?)
• A four-step phase-fitted method for the numerical integration of second order initial-value problems
• A new family of phase-fitted and amplification-fitted Runge-Kutta type methods for oscillators
• Comparing different ODE modelling approaches for gene regulatory networks
• Dynamic patterns of gene regulation. I: Simple two-gene systems
• Genetic oscillation deduced from Hopf bifurcation in a genetic regulatory network with delays
• Geometric Numerical Integration
• Limit-cycle-preserving simulation of gene regulatory oscillators
• Modeling in Computational Biology and Biomedicine
• Novel phase-fitted symmetric splitting methods for chemical oscillators
• On the Construction and Comparison of Difference Schemes
• On the choice of the frequency in trigonometrically-fitted methods for periodic problems
• Phase-fitted and amplification-fitted two-step hybrid methods for \(y^{\prime\prime }=f(x,y)\)
• Splitting and composition methods for explicit time dependence in separable dynamical systems
• Splitting and composition methods in the numerical integration of differential equations
• Splitting strategy for simulating genetic regulatory networks
• Structure-preserving algorithms for oscillatory differential equations
• The cell cycle is a limit cycle

Cited in

(3)

• Limit-cycle-preserving simulation of gene regulatory oscillators
• Novel phase-fitted symmetric splitting methods for chemical oscillators
• Balanced truncation for model reduction of biological oscillators

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