NETWORKS FROM GENE EXPRESSION TIME SERIES: CHARACTERIZATION OF CORRELATION PATTERNS

DOI10.1142/S0218127407018543MaRDI QIDQ3511060zbMATH OpenOpenAlexWikidataFDO

Authors Daniel Remondini, N. Neretti, Claudio Franceschi, P. Tieri, J. M. Sedivy, L. Milanesi, Gastone Castellani

Publication date 4 July 2008

Published in International Journal of Bifurcation and Chaos in Applied Sciences and Engineering (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/q-bio/0611043

zbMATH Keywords

correlation matrixgene expression dynamicsnetwork theoryphase transitiontime series analysis

Mathematics Subject Classification ID

Applications of statistical mechanics to specific types of physical systems (82D99) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Abstract: This paper describes characteristic features of networks reconstructed from gene expression time series data. Several null models are considered in order to discriminate between informations embedded in the network that are related to real data, and features that are due to the method used for network reconstruction (time correlation).

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Cites work

• Complex networks: structure and dynamics
• The Structure and Function of Complex Networks

Cited in

(1)

• Correlated fluctuations carry signatures of gene regulatory network dynamics

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