Navigation in tree spaces

DOI10.1016/J.AAM.2015.03.006MaRDI QIDQ2346480zbMATH OpenOpenAlexFDO

Authors Satyan L. Devadoss, Jack Morava

Publication date 2 June 2015

Published in Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1009.3224

zbMATH Keywords

associahedronconfiguration spacesphylogeneticstree spaces

Mathematics Subject Classification ID

Families, moduli of curves (algebraic) (14H10) (n)-dimensional polytopes (52B11) Taxonomy, cladistics, statistics in mathematical biology (92B10)

Abstract: The orientable cover of the moduli space of real genus zero algebraic curves with marked points is a compact aspherical manifold tiled by associahedra, which resolves the singularities of the space of phylogenetic trees. The resolution maps planar metric trees to their underlying abstract representatives, collapsing and folding an explicit geometric decomposition of the moduli space into cubes. This decomposition endows the resolving space with an interesting canonical pseudometric. The second part of this paper defines a related (stacky) resolution of a space of real quadratic forms, and suggests, perhaps without much justification, that systems of oscillators parametrized by such objects may provide useful models in genomics.

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Cited in

(6)

• Combinatorics and topology of Kawai-Lewellen-Tye relations
• A tree expansion formula of a homology intersection number on the configuration space \(\mathcal{M}_{0,n} \)
• Skeletal configurations of ribbon trees
• Operads and Phylogenetic Trees
• A space of phylogenetic networks
• Belyi pair for the orientation cover of \(\overline{\mathcal{M}_{0,5}^{\mathbb{R}}}\)

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