Nonlinear DNA dynamics: nonlinearity versus dispersion

DOI10.1016/J.AMC.2013.09.064MaRDI QIDQ275762zbMATH OpenOpenAlexFDO

Authors Slobodan Zdravković, Miljko V. Satarić

Publication date 26 April 2016

Published in Applied Mathematics and Computation (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1212.0376

zbMATH Keywords

dispersionnonlinearityDNA dynamicshelicoidal Peyrard-Bishop modelnonlinear Schrödinger equation

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) NLS equations (nonlinear Schrödinger equations) (35Q55)

Abstract: In the present paper we study the impact of dispersion and nonlinearity on DNA dynamics. We rely on the helicoidal Peyrard-Bishop model and use the fact that nonlinear DNA dynamics represents an interplay between nonlinearity and dispersion. We state that a dispersion coefficient and a coefficient of nonlinearity, existing in nonlinear Schr"odinger equation, are mutually dependent and show how function and can be obtained. Also, we show how all this can be used to find a possible interval for the parameter describing helicoidal structure of DNA.

Recommendations

• Nonlinear dynamics of DNA with higher order interactions
• Helicoidal Peyrard-Bishop model of DNA dynamics
• NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS
• Parameter selection in a Peyrard-Bishop-Dauxois model for DNA dynamics
• scientific article; zbMATH DE number 1972907

Cites work

• scientific article; zbMATH DE number 5723589 (Why is no real title available?)
• scientific article; zbMATH DE number 1994518 (Why is no real title available?)
• Helicoidal Peyrard-Bishop model of DNA dynamics
• Parameter selection in a Peyrard-Bishop-Dauxois model for DNA dynamics
• The Impact of Viscosity on the DNA Dynamics
• The nonlinear Schrödinger equation. Self-focusing and wave collapse
• Unsteady water wave modulations: Fully nonlinear solutions and comparison with the nonlinear Schrödinger equation.

Cited in

(9)

• Chaotic DNA Dynamics
• scientific article; zbMATH DE number 1972907 (Why is no real title available?)
• scientific article; zbMATH DE number 6285670 (Why is no real title available?)
• A nonlinear model for DNA dynamics
• Some aspects of nonlinearity and self-organization in biosystems on examples of localized excitations in the DNA molecule and generalized Fisher-KPP model
• NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS
• Nonlinear charge transport mechanism in periodic and disordered DNA
• Dynamic of DNA's possible impact on its damage
• SELF-ORGANIZATION AND NONLINEAR DYNAMICS OF NUCLEIC ACID–WATER SYSTEM

This page was built for publication: Nonlinear DNA dynamics: nonlinearity versus dispersion

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q275762)