NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS

DOI10.1142/S0217979212501019MaRDI QIDQ4914502zbMATH OpenOpenAlexFDO

Authors M. Saha, Timoléon C. Kofané

Publication date 12 April 2013

Published in International Journal of Modern Physics B (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0217979212501019

zbMATH Keywords

breather-like solitonsKac-Baker long-range interactionsproteinsspin model

Mathematics Subject Classification ID

PDEs in connection with biology, chemistry and other natural sciences (35Q92) Biophysics (92C05) Biochemistry, molecular biology (92C40)

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Cites work

• A coupled base-rotator model for structure and dynamics of DNA -- local fluctuations in helical twist angles and topological solitons.
• Coherent and incoherent states of the radiation field
• Compacton-like modes in model DNA systems and their bearing on biological functioning
• Discrete instability in the DNA double helix
• Field Dependence of the Intrinsic Domain Magnetization of a Ferromagnet
• Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
• Nonlinear excitations in a compressible quantum Heisenberg chain
• Perturbed soliton excitations in the DNA double helix
• Study of Several Lattice Systems with Long-Range Forces
• The Impact of Viscosity on the DNA Dynamics

Cited in

(11)

• A combined wormlike-chain and bead model for dynamic simulations of long linear DNA
• Nonlinear dynamics of damped DNA systems with long-range interactions
• Resonant long-range interactions between polar macromolecules
• Nonlinear DNA dynamics: nonlinearity versus dispersion
• Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
• Kink solitons in DNA
• Effects of next-nearest-neighbor interactions on discrete multibreathers corresponding to Davydov model with saturable nonlinearities
• Effect of helix angles on polaron motion in poly-DNA
• Nonlinear dynamics of DNA chain with long-range interactions
• Dynamics of DNA unwinding by helicases with frequent backward steps
• DNA base pairs openings perturbed by the surrounding medium

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