On Timed Models of Gene Networks

DOI10.1007/978-3-540-75454-1_5MaRDI QIDQ3510833zbMATH OpenOpenAlexFDO

Authors Grégory Batt, Ramzi Ben Salah, Oded Maler

Publication date 3 July 2008

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-75454-1_5

Mathematics Subject Classification ID

Formal languages and automata (68Q45) Biochemistry, molecular biology (92C40)

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(10)

• A genetically modified Hoare logic
• Temporal constraints in the logical analysis of regulatory networks
• Activity networks with delays an application to toxicity analysis
• Verification of dynamic behaviour in qualitative molecular networks describing gene regulation, signalling and whole-cell metabolism
• Delays in Biological Regulatory Networks (BRN)
• Model Checking Genetic Regulatory Networks with Parameter Uncertainty
• Applications of an expressive statistical model checking approach to the analysis of genetic circuits
• Improving the timed automata approach to biological pathway dynamics
• Model checking of biological systems
• An adjustable aperiodic model class of genomic interactions using continuous time Boolean networks (Boolean delay equations)

Describes a project that uses

Uses Software

• PHAVer

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