On multilabel classification methods of incompletely labeled biomedical text data
Summary: Multilabel classification is often hindered by incompletely labeled training datasets; for some items of such dataset (or even for all of them) some labels may be omitted. In this case, we cannot know if any item is labeled fully and correctly. When we train a classifier directly on incompletely labeled dataset, it performs ineffectively. To overcome the problem, we added an extra step, training set modification, before training a classifier. In this paper, we try two algorithms for training set modification: weighted k-nearest neighbor (WkNN) and soft supervised learning (SoftSL). Both of these approaches are based on similarity measurements between data vectors. We performed the experiments on AgingPortfolio (text dataset) and then rechecked on the yeast (nontext genetic data). We tried SVM and RF classifiers for the original datasets and then for the modified ones. For each dataset, our experiments demonstrated that both classification algorithms performed considerably better when preceded by the training set modification step.
- Improving multi-label classification with missing labels by learning label-specific features
- Multi-label learning with missing and completely unobserved labels
- Towards optimal use of incomplete classification data
- Robust multiclass classification for learning from imbalanced biomedical data
- Label-specific feature selection and two-level label recovery for multi-label classification with missing labels
- A novel weighted support vector machine based on particle swarm optimization for gene selection and tumor classification
- Iterative reweighted noninteger norm regularizing SVM for gene expression data classification
- Nearest neighbor pattern classification
- Nonnegative mixed-norm convex optimization for mitotic cell detection in phase contrast microscopy
- Random forests
- Text categorization with support vector machines. How to represent texts in input space?
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