outbreaker2

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Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

Rich Fitzjohn, Thibaut Jombart, Finlay Campbell

Last update: 23 May 2022

Copyright license: MIT license, File License

Software version identifier: 1.1.3

Official website: https://cran.r-project.org/web/packages/outbreaker2/index.html

Source code repository: https://github.com/cran/outbreaker2

Cites work

• Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
• Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

Cited In (4)

• Branching Process Models to Identify Risk Factors for Infectious Disease Transmission
• InfectionTrees
• o2geosocial
• RcppAlgos

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