Parallel molecular dynamics simulation of a protein

DOI10.1016/S0167-8191(01)00079-5MaRDI QIDQ5941262zbMATH OpenFDO

Authors Y. Komeiji, M. Haraguchi, Umpei Nagashima

Publication date 20 August 2001

Published in Parallel Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/S0167-8191(01)00079-5

Mathematics Subject Classification ID

Recommendations

• Parallel molecular dynamics of biomolecules
• scientific article; zbMATH DE number 434564
• Parallel molecular dynamics using OPENMP on a shared memory machine
• A massively parallel molecular dynamics algorithm for the MasPar supercomputer
• Moldy: a portable molecular dynamics simulation program for serial and parallel computers

Cited in

(20)

• Parallel discrete element simulation of poly-dispersed granular material
• Parallel molecular dynamics of biomolecules
• NAMD2: Greater scalability for parallel molecular dynamics
• A special purpose array processor architecture for the molecular dynamics simulation of point-mutated proteins
• Moldy: a portable molecular dynamics simulation program for serial and parallel computers
• The GROMOS96 benchmarks for molecular simulation
• Parallel molecular dynamics using OPENMP on a shared memory machine
• PEACH 4 with ABINIT-MP: a general platform for classical and quantum simulations of biological molecules
• CAVE-CL: an OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins
• scientific article; zbMATH DE number 434564 (Why is no real title available?)
• scientific article; zbMATH DE number 5951704 (Why is no real title available?)
• Acceleration of biomolecular dynamics simulations on the Earth Simulator
• The GROMACS and NAMD software packages comparison.
• Investigating protein-protein and protein-ligand interactions by molecular dynamics simula\-tions
• Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model
• scientific article; zbMATH DE number 2173641 (Why is no real title available?)
• A domain decomposition molecular dynamics program for the simulation of flexible molecules with an arbitrary topology of Lennard-Jones and/or Gay-Berne sites
• [SMMP] A modern package for simulation of proteins
• An enhanced version of SMMP-open-source software package for simulation of proteins
• SMMP v. 3.0-simulating proteins and protein interactions in Python and Fortran

This page was built for publication: Parallel molecular dynamics simulation of a protein

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5941262)