Parallel syntenic alignments

DOI10.1007/3-540-36265-7_40MaRDI QIDQ4417488zbMATH OpenFDO

Authors Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang

Publication date 29 July 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL http://link.springer.de/link/service/series/0558/bibs/2552/25520420.htm, https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=1047&context=cs_conf

Mathematics Subject Classification ID

Parallel algorithms in computer science (68W10) Protein sequences, DNA sequences (92D20)

Recommendations

• Parallel biological sequence comparison using prefix computations.
• A parallel strategy for biological sequence alignment in restricted memory space
• scientific article; zbMATH DE number 2243049
• Parallel strategies for the local biological sequence alignment in a cluster of workstations
• FastLSA: A fast, linear-space, parallel and sequential algorithm for sequence alignment

Cited in

(5)

• Exact parallel alignment of megabase genomic sequences with tunable work distribution
• Gaps and Runs in Syntenic Alignments
• DNA Computing
• A parallel implementation for determining genomic distances under deletion and insertion
• Decoding the genomic architecture of mammalian and plant genomes: synteny blocks and large-scale duplications

This page was built for publication: Parallel syntenic alignments

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4417488)