| Publication | Date of Publication | Type |
|---|
Identifying Markov chain models from time-to-event data: an algebraic approach
Bulletin of Mathematical Biology | 2025-01-13 | Paper |
| MelanoDB: Database files of clinical and molecular1 features of advanced melanoma patients treated with2 MAPK inhibitors | 2025-01-12 | Dataset |
| MelanoDB: A Database of clinical and molecular features of advanced melanoma patients treated with2 MAPK inhibitors | 2024-07-11 | Dataset |
Reduction of Chemical Reaction Networks with Approximate Conservation Laws
SIAM Journal on Applied Dynamical Systems | 2024-01-29 | Paper |
A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics
Theoretical Computer Science | 2024-01-05 | Paper |
| Identifying Markov chain models from time-to-event data: an algebraic approach | 2023-11-06 | Paper |
Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations
(available as arXiv preprint) | 2023-01-18 | Paper |
| A Computational Approach to Polynomial Conservation Laws | 2022-12-30 | Paper |
| Interval constraint satisfaction and optimization for biological homeostasis and multistationarity | 2022-12-22 | Paper |
| Tropical geometry of biological systems (invited talk) | 2022-12-21 | Paper |
A linear algebra approach for detecting binomiality of steady state ideals of reversible chemical reaction networks
(available as arXiv preprint) | 2022-12-21 | Paper |
| BurstDECONV, artificial datasets | 2022-12-14 | Dataset |
| LNetReduce: tool for reducing linear dynamic networks with separated timescales | 2022-05-25 | Paper |
Algorithmic reduction of biological networks with multiple time scales
Mathematics in Computer Science | 2021-11-24 | Paper |
Push-forward method for piecewise deterministic biochemical simulations
Theoretical Computer Science | 2021-11-01 | Paper |
A case study on the parametric occurrence of multiple steady states
Proceedings of the 2017 ACM on International Symposium on Symbolic and Algebraic Computation | 2020-09-09 | Paper |
Identifying the parametric occurrence of multiple steady states for some biological networks
Journal of Symbolic Computation | 2020-01-15 | Paper |
Effective computational methods for hybrid stochastic gene networks
(available as arXiv preprint) | 2019-10-10 | Paper |
Spatio-genetic and phenotypic modelling elucidates resistance and re-sensitisation to treatment in heterogeneous melanoma
Journal of Theoretical Biology | 2019-04-26 | Paper |
A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
Journal of Theoretical Biology | 2018-12-11 | Paper |
Signal propagation in sensing and reciprocating cellular systems with spatial and structural heterogeneity
Bulletin of Mathematical Biology | 2018-09-05 | Paper |
Signal propagation in sensing and reciprocating cellular systems with spatial and structural heterogeneity
Bulletin of Mathematical Biology | 2018-09-05 | Paper |
| Hybrid reductions of computational models of ion channels coupled to cellular biochemistry | 2018-03-22 | Paper |
Symbolic versus numerical computation and visualization of parameter regions for multistationarity of biological networks
(available as arXiv preprint) | 2018-02-23 | Paper |
Maximal switchability of centralized networks
Nonlinearity | 2016-08-23 | Paper |
Protein synthesis driven by dynamical stochastic transcription
Bulletin of Mathematical Biology | 2016-03-15 | Paper |
A geometric method for model reduction of biochemical networks with polynomial rate functions
Bulletin of Mathematical Biology | 2016-02-23 | Paper |
Analysis of reaction network systems using tropical geometry
Computer Algebra in Scientific Computing | 2015-11-25 | Paper |
Tropicalization and tropical equilibration of chemical reactions
Contemporary Mathematics | 2015-09-11 | Paper |
Multimodality and flexibility of stochastic gene expression
Bulletin of Mathematical Biology | 2014-04-22 | Paper |
Tropical geometries and dynamics of biochemical networks application to hybrid cell cycle models
Electronic Notes in Theoretical Computer Science | 2014-03-21 | Paper |
Flexible and robust patterning by centralized gene networks
Fundamenta Informaticae | 2012-08-01 | Paper |
Flexible and robust patterning by centralized gene networks
Fundamenta Informaticae | 2012-08-01 | Paper |
Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities
Lecture Notes in Computer Science | 2011-05-27 | Paper |
Arithmetic properties of module directions in quasicrystals coincidence modules and coincidence quasilattices
Acta Crystallographica Section A Foundations of Crystallography | 2010-06-10 | Paper |
Matched asymptotic solutions for the steady banded flow of the diffusive Johnson-Segalman model in various geometries
Journal of Non-Newtonian Fluid Mechanics | 2000-11-13 | Paper |
Arithmetic properties of spectra produced by Farey hierarchies of approximants
Journal of Mathematical Physics | 1999-11-21 | Paper |
Dynamics of lattice vibrations for one-dimensional commensurate and incommensurate composites with harmonic interaction
Journal of Physics A: Mathematical and General | 1999-05-18 | Paper |
