| Publication | Date of Publication | Type |
|---|
| Sub-membrane actin rings compartmentalize the plasma membrane | 2023-12-15 | Dataset |
| Data for the study "Electronic excited states in deep variational Monte Carlo" | 2022-11-22 | Dataset |
Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs
Multiscale Modeling & Simulation | 2022-01-19 | Paper |
| Deeptime: a Python library for machine learning dynamical models from time series data | 2021-10-28 | Paper |
| Symmetric and antisymmetric kernels for machine learning problems in quantum physics and chemistry | 2021-03-31 | Paper |
Variational approach for learning Markov processes from time series data
Journal of Nonlinear Science | 2020-03-05 | Paper |
Kernel methods for detecting coherent structures in dynamical data
Chaos: An Interdisciplinary Journal of Nonlinear Science | 2020-02-03 | Paper |
Data-driven model reduction and transfer operator approximation
Journal of Nonlinear Science | 2018-07-20 | Paper |
| Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics | 2018-01-12 | Paper |
| Markov State Models from short non-Equilibrium Simulations - Analysis and Correction of Estimation Bias | 2017-01-06 | Paper |
| Spectral learning of dynamic systems from nonequilibrium data | 2016-09-04 | Paper |
Uncertainty estimation
Advances in Experimental Medicine and Biology | 2015-07-20 | Paper |
Analysis of Markov Models
Advances in Experimental Medicine and Biology | 2015-07-20 | Paper |
Estimation and validation of Markov models
Advances in Experimental Medicine and Biology | 2015-07-20 | Paper |
| Estimation and uncertainty of reversible Markov models | 2015-07-19 | Paper |
Optimal estimation of free energies and stationary densities from multiple biased simulations
Multiscale Modeling & Simulation | 2015-05-19 | Paper |
A variational approach to modeling slow processes in stochastic dynamical systems
Multiscale Modeling & Simulation | 2014-05-21 | Paper |
Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
Proceedings of the National Academy of Sciences | 2013-01-07 | Paper |
| Spectral rate theory for projected two-state kinetics | 2012-07-01 | Paper |
Efficient computation, sensitivity, and error analysis of committor probabilities for complex dynamical processes
Multiscale Modeling & Simulation | 2011-11-17 | Paper |
Optimizing in Graphs with Expensive Computation of Edge Weights
Operations Research Proceedings | 2011-04-07 | Paper |
Probability Distance Based Compression of Hidden Markov Models
Multiscale Modeling & Simulation | 2011-03-22 | Paper |
On the approximation quality of Markov state models
Multiscale Modeling & Simulation | 2011-01-21 | Paper |
| scientific article; zbMATH DE number 5587342 (Why is no real title available?) | 2009-07-27 | Paper |
Computing Best Transition Pathways in High-Dimensional Dynamical Systems: Application to the AlphaL \leftrightharpoons Beta \leftrightharpoons AlphaR Transitions in Octaalanine
Multiscale Modeling & Simulation | 2007-06-26 | Paper |
