On the Approximation Quality of Markov State Models

From MaRDI portal
Publication:3067563

DOI10.1137/090764049zbMath1210.60082OpenAlexW1988220126MaRDI QIDQ3067563

Christof Schütte, Marco Sarich, Frank Noé

Publication date: 21 January 2011

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/a083d9b69ac6d5d6fc25487401529bbe15f443ee




Related Items (27)

Approximation metrics based on probabilistic bisimulations for general state-space Markov processes: a surveyFinding Dominant Structures of Nonreversible Markov ProcessesA sparse Markov chain approximation of LQ-type stochastic control problems.Fuzzy spectral clustering by PCCA+: application to Markov state models and data classificationOvercoming the timescale barrier in molecular dynamics: Transfer operators, variational principles and machine learningOptimizing Weighted Ensemble Sampling of Steady StatesMeasure-based diffusion grid construction and high-dimensional data discretizationAnalysis and optimization of weighted ensemble samplingA Weak Characterization of Slow Variables in Stochastic Dynamical Systems\textsf{ZIBgridfree}: efficient conformational analysis by partition-of-unity couplingModularity of directed networks: cycle decomposition approachTransition manifolds of complex metastable systems. Theory and data-driven computation of effective dynamicsTensor networks and hierarchical tensors for the solution of high-dimensional partial differential equationsMathematical modeling of spatio-temporal population dynamics and application to epidemic spreadingPartial differential equations and stochastic methods in molecular dynamicsOptimal control of molecular dynamics using Markov state modelsData-driven model reduction and transfer operator approximationA Multiscale Perturbation Expansion Approach for Markov State Modeling of Nonstationary Molecular DynamicsA Mathematical Framework for Exact MilestoningAgent-based modeling: Population limits and large timescalesA Meshless Discretization Method for Markov State Models Applied to Explicit Water Peptide Folding SimulationsTensor-based computation of metastable and coherent setsError Bounds for Dynamical Spectral EstimationComputing the Minimal Rebinding Effect Included in a Given KineticsA Convergent Discretization Method for Transition Path Theory for Diffusion ProcessesMarkov Model TheoryEstimation and Validation of Markov Models




This page was built for publication: On the Approximation Quality of Markov State Models