Markov model theory

DOI10.1007/978-94-007-7606-7_3MaRDI QIDQ5264045zbMATH OpenOpenAlexWikidataFDO

Authors Marco Sarich, Jan-Hendrik Prinz, Christof Schütte

Publication date 20 July 2015

Published in Advances in Experimental Medicine and Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-94-007-7606-7_3

zbMATH Keywords

Markov modelsmolecular systems

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Continuous-time Markov processes on general state spaces (60J25)

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Cites work

• scientific article; zbMATH DE number 2152902 (Why is no real title available?)
• scientific article; zbMATH DE number 961607 (Why is no real title available?)
• A direct approach to conformational dynamics based on hybrid Monte Carlo
• Approximating selected non-dominant timescales by Markov state models
• Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
• Estimating the eigenvalue error of Markov state models
• Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains
• Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations
• Meshless methods in conformation dynamics
• Metastability and Markov state models in molecular dynamics. Modeling, analysis, algorithmic approaches
• On the approximation quality of Markov state models
• Phase transitions and metastability in Markovian and molecular systems
• Robust Perron cluster analysis in conformation dynamics
• Transition Path Theory for Markov Jump Processes
• Tunnel effect and symmetries for Kramers-Fokker-Planck type operators

Cited in

(8)

• A meshless discretization method for Markov state models applied to explicit water peptide folding simulations
• A review of Girsanov reweighting and of square root approximation for building molecular Markov state models
• On the approximation quality of Markov state models
• Approximating selected non-dominant timescales by Markov state models
• scientific article; zbMATH DE number 7424978 (Why is no real title available?)
• Estimating the eigenvalue error of Markov state models
• Domain theory, testing and simulation for labelled Markov processes
• An overview and practical guide to building Markov state models

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