| Publication | Date of Publication | Type |
|---|
| Chimeric U-net -- modifying the standard U-net towards explainability | 2025-01-17 | Paper |
| Implementation of the methods from the paper "A Mathematical perspective on Romanisation: Modelling the Roman road activation process in ancient Tunisia" | 2024-05-21 | Software |
| Koopman-based surrogate models for multi-objective optimization of agent-based systems | 2024-05-03 | Paper |
| Approximating particle-based clustering dynamics by stochastic PDEs | 2024-01-01 | Paper |
| Overcoming the timescale barrier in molecular dynamics: Transfer operators, variational principles and machine learning | 2023-09-12 | Paper |
| Rate-limiting recovery processes in neurotransmission under sustained stimulation | 2023-09-04 | Paper |
| Partial mean-field model for neurotransmission dynamics | 2023-07-04 | Paper |
| Optimal Reaction Coordinates: Variational Characterization and Sparse Computation | 2023-06-30 | Paper |
| A Route to the Hydrodynamic Limit of a Reaction-Diffusion Master Equation Using Gradient Structures | 2023-05-26 | Paper |
| Modelling altered signalling of G‑protein coupled receptors in inflamed environment to advance drug design | 2023-01-12 | Paper |
| Implementation of the model for the paper "Modelling opinion dynamics under the impact of influencer and media strategies" | 2023-01-01 | Software |
| Objective priors in the empirical Bayes framework | 2022-10-25 | Paper |
| Solving eigenvalue PDEs of metastable diffusion processes using artificial neural networks | 2022-07-21 | Paper |
| Improving control based importance sampling strategies for metastable diffusions via adapted metadynamics | 2022-06-14 | Paper |
| A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations | 2022-06-01 | Paper |
| Variance of filtered signals: characterization for linear reaction networks and application to neurotransmission dynamics | 2022-03-22 | Paper |
| A probabilistic algorithm for aggregating vastly undersampled large Markov chains | 2022-03-21 | Paper |
| Data-driven approximation of the Koopman generator: model reduction, system identification, and control | 2022-03-17 | Paper |
| Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs | 2022-01-19 | Paper |
| Data-driven modelling of nonlinear dynamics by barycentric coordinates and memory | 2021-12-13 | Paper |
| Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading | 2021-11-09 | Paper |
| Solving eigenvalue PDEs of metastable diffusion processes using artificial neural networks | 2021-10-27 | Paper |
| Agent-based modeling: Population limits and large timescales | 2021-05-06 | Paper |
| Dimensionality reduction of complex metastable systems via kernel embeddings of transition manifolds | 2021-04-29 | Paper |
| Extending transition path theory: periodically driven and finite-time dynamics | 2021-04-29 | Paper |
| Memory-based reduced modelling and data-based estimation of opinion spreading | 2021-04-29 | Paper |
| Simulation results of the agent-based systems used for data-driven model reduction via the Koopman generator | 2021-04-21 | Dataset |
| From interacting agents to density-based modeling with stochastic PDEs | 2021-04-16 | Paper |
| CINDy: Conditional gradient-based Identification of Non-linear Dynamics -- Noise-robust recovery | 2021-01-07 | Paper |
| Stochastic Dynamics in Computational Biology | 2021-01-07 | Paper |
| Data-driven model reduction of agent-based systems using the Koopman generator | 2020-12-14 | Paper |
| A Weak Characterization of Slow Variables in Stochastic Dynamical Systems | 2020-11-09 | Paper |
| Singular Value Decomposition of Operators on Reproducing Kernel Hilbert Spaces | 2020-11-09 | Paper |
| The Augmented Jump Chain -- a sparse representation of time-dependent Markov jump processes | 2020-08-11 | Paper |
| Kernel Autocovariance Operators of Stationary Processes: Estimation and Convergence | 2020-04-02 | Paper |
| Learning Chemical Reaction Networks from Trajectory Data | 2020-01-03 | Paper |
| Jarzynski's equality, fluctuation theorems, and variance reduction: mathematical analysis and numerical algorithms | 2019-08-01 | Paper |
| A Multiscale Perturbation Expansion Approach for Markov State Modeling of Nonstationary Molecular Dynamics | 2018-10-15 | Paper |
| Multidimensional approximation of nonlinear dynamical systems | 2018-09-07 | Paper |
| Tensor-based dynamic mode decomposition | 2018-07-23 | Paper |
| Data-driven model reduction and transfer operator approximation | 2018-07-20 | Paper |
| Statistical analysis of the first passage path ensemble of jump processes | 2018-05-28 | Paper |
| Transition manifolds of complex metastable systems. Theory and data-driven computation of effective dynamics | 2018-04-16 | Paper |
| Importance sampling in path space for diffusion processes with slow-fast variables | 2018-02-12 | Paper |
| Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics | 2018-01-12 | Paper |
| Nearest-neighbor interaction systems in the tensor-train format | 2017-12-15 | Paper |
| Sparse Non-Gaussian Component Analysis | 2017-07-27 | Paper |
| Graph Algorithms for Dynamical Systems | 2017-07-19 | Paper |
| Conditional Averaging for Diffusive Fast-Slow Systems: A Sketch for Derivation | 2017-07-19 | Paper |
| Transition manifolds of complex metastable systems: Theory and data-driven computation of effective dynamics | 2017-04-28 | Paper |
| Towards tensor-based methods for the numerical approximation of the Perron-Frobenius and Koopman operator | 2017-04-25 | Paper |
| Random walks on complex modular networks | 2017-02-17 | Paper |
| Finding Dominant Structures of Nonreversible Markov Processes | 2016-12-13 | Paper |
| Solving the master equation without kinetic Monte Carlo: tensor train approximations for a CO oxidation model | 2016-12-05 | Paper |
| On the numerical approximation of the Perron-Frobenius and Koopman operator | 2016-10-31 | Paper |
| Model reduction algorithms for optimal control and importance sampling of diffusions | 2016-08-23 | Paper |
| Markov state models for rare events in molecular dynamics | 2016-06-15 | Paper |
| Modularity of directed networks: cycle decomposition approach | 2015-08-31 | Paper |
| Markov Model Theory | 2015-07-20 | Paper |
| Applications of the Cross-Entropy Method to Importance Sampling and Optimal Control of Diffusions | 2015-03-02 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5173663 | 2015-02-16 | Paper |
| Modularity revisited: a novel dynamics-based concept for decomposing complex networks | 2015-01-06 | Paper |
| Markov control processes with rare state observation: theory and application to treatment scheduling in HIV-1 | 2014-12-22 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5745832 | 2014-01-31 | Paper |
| A structure-preserving numerical discretization of reversible diffusions | 2014-01-21 | Paper |
| Hybrid Stochastic--Deterministic Solution of the Chemical Master Equation | 2013-05-02 | Paper |
| Sequential Change Point Detection in Molecular Dynamics Trajectories | 2013-05-02 | Paper |
| Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations | 2013-01-07 | Paper |
| Approximating selected non-dominant timescales by Markov state models | 2012-12-29 | Paper |
| Optimal control of molecular dynamics using Markov state models | 2012-11-02 | Paper |
| Estimating the eigenvalue error of Markov state models | 2012-08-30 | Paper |
| Efficient Rare Event Simulation by Optimal Nonequilibrium Forcing | 2012-08-15 | Paper |
| On Markov state models for metastable processes | 2011-11-11 | Paper |
| On the Approximation Quality of Markov State Models | 2011-01-21 | Paper |
| Balanced Truncation of Linear Second-Order Systems: A Hamiltonian Approach | 2011-01-21 | Paper |
| Optimal Fuzzy Aggregation of Networks | 2011-01-21 | Paper |
| On Metastable Conformational Analysis of Nonequilibrium Biomolecular Time Series | 2010-06-10 | Paper |
| Likelihood-Based Estimation of Multidimensional Langevin Models and Its Application to Biomolecular Dynamics | 2009-10-19 | Paper |
| Transition Path Theory for Markov Jump Processes | 2009-10-16 | Paper |
| Towards effective dynamics in complex systems by Markov kernel approximation | 2009-08-06 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5190854 | 2009-07-27 | Paper |
| Macroscopic Dynamics of Complex Metastable Systems: Theory, Algorithms, and Application to B-DNA | 2009-04-30 | Paper |
| Automated Generation of Reduced Stochastic Weather Models I: Simultaneous Dimension and Model Reduction for Time Series Analysis | 2008-12-11 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5457452 | 2008-04-14 | Paper |
| https://portal.mardi4nfdi.de/entity/Q5457164 | 2008-04-14 | Paper |
| Generator estimation of Markov jump processes | 2007-11-30 | Paper |
| Automated Model Reduction for Complex Systems Exhibiting Metastability | 2007-09-07 | Paper |
| Comment on two distinct notions of free energy | 2007-05-23 | Paper |
| Reduced Stochastic Models for Complex Molecular Systems | 2006-11-22 | Paper |
| A geometric approach to constrained molecular dynamics and free energy | 2005-10-11 | Paper |
| A constrained hybrid Monte‐Carlo algorithm and the problem of calculating the free energy in several variables | 2005-10-10 | Paper |
| Eigenvalue bounds on restrictions of reversible nearly uncoupled Markov chains | 2005-05-04 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4664503 | 2005-04-05 | Paper |
| Uncoupling-Coupling Techniques for Metastable Dynamical Systems | 2005-03-10 | Paper |
| An Averaging Principle for Fast Degrees of Freedom Exhibiting Long-Term Correlations | 2005-03-01 | Paper |
| Metastability of Diffusion Processes | 2005-02-11 | Paper |
| Phase transitions and metastability in Markovian and molecular systems | 2004-06-10 | Paper |
| Extracting macroscopic stochastic dynamics: Model problems | 2003-01-28 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4544264 | 2002-08-12 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4524854 | 2002-01-19 | Paper |
| https://portal.mardi4nfdi.de/entity/Q2712849 | 2001-08-21 | Paper |
| https://portal.mardi4nfdi.de/entity/Q2712882 | 2001-08-21 | Paper |
| Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains | 2001-06-19 | Paper |
| https://portal.mardi4nfdi.de/entity/Q2712884 | 2001-05-06 | Paper |
| Adaptive accuracy control for Car-Parrinello simulations | 2000-04-04 | Paper |
| A direct approach to conformational dynamics based on hybrid Monte Carlo | 2000-03-30 | Paper |
| On the Singular Limit of the Quantum-Classical Molecular Dynamics Model | 1999-09-13 | Paper |
| Homogenization approach to smoothed molecular dynamics | 1999-09-02 | Paper |
| A mathematical investigation of the Car-Parrinello method | 1998-02-01 | Paper |
| Homogenization of Hamiltonian systems with a strong constraining potential | 1997-03-12 | Paper |
| A Quasiresonant Smoothing Algorithm for the Fast Analysis of Selective Vibrational Excitation | 1994-06-13 | Paper |
| On finding optimal collective variables for complex systems by minimizing the deviation between effective and full dynamics | N/A | Paper |
