On Metastable Conformational Analysis of Nonequilibrium Biomolecular Time Series

DOI10.1137/080744347zbMath1284.62048MaRDI QIDQ3567053

Publication date: 10 June 2010

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/529849ef78c32efa0edf68b407c7437692ab7931

zbMATH Keywords

clustering; dimension reduction; hidden Markov models; time series analysis; molecular dynamics

Mathematics Subject Classification ID

62H25: Factor analysis and principal components; correspondence analysis

62M10: Time series, auto-correlation, regression, etc. in statistics (GARCH)

62H30: Classification and discrimination; cluster analysis (statistical aspects)

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

65M60: Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs

Uses Software