phylopred

MaRDI QIDQ7394885CRANFDO

Authors Angel Robles

Last update 14 October 2026

Copyright license MIT license, File License

Software version identifier 0.1.0

Description

Tools to model and predict host-parasite (and other pairwise species) interactions from phylogenetic distance under presence-only data. Provides pairwise host-sharing logistic models with cluster-aware bootstrap and slope comparison between clades, presence-only performance metrics (a threshold efficiency metric and a phylogenetic partial receiver operating characteristic (ROC) adapted from Peterson, Papes and Soberon (2008) <doi:10.1016/j.ecolmodel.2007.11.008>), positive-unlabeled host prediction, and leave-hosts-out validation. Methods build on Robles-Fernandez and Lira-Noriega (2017) <doi:10.3389/fams.2017.00017>.

Cites work

• Combining Phylogenetic and Occurrence Information for Risk Assessment of Pest and Pathogen Interactions with Host Plants
• Rethinking receiver operating characteristic analysis applications in ecological niche modeling

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