Protein-DNA recognition: breaking the combinatorial barrier

DOI10.1016/J.CPC.2008.01.033MaRDI QIDQ711190zbMATH OpenOpenAlexFDO

Authors Cyril Deremble, Richard Lavery, Krystyna Zakrzewska

Publication date 25 October 2010

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cpc.2008.01.033

zbMATH Keywords

molecular mechanicsprotein bindingDNA deformationmacromolecular recognition

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08) Biophysics (92C05)

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Cited in

(8)

• Computational Science - ICCS 2004
• Brownian dynamics simulation for protein folding and binding
• Salt dependent association of novel mutants of TATA-binding proteins to DNA: predictions from theory and experiments
• Energy fluctuations shape free energy of nonspecific biomolecular interactions
• Application of complex demodulation on bZIP and bHLH-PAS protein domains
• How conformational dynamics influences the protein search for targets on DNA
• scientific article; zbMATH DE number 2114997 (Why is no real title available?)
• Computational prediction of protein-DNA interactions based on wavelet transforms

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