Protein-DNA recognition: breaking the combinatorial barrier

DOI10.1016/J.CPC.2008.01.033MaRDI QIDQ711190zbMATH OpenOpenAlexFDO

Authors Cyril Deremble, Richard Lavery, Krystyna Zakrzewska

Publication date 25 October 2010

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cpc.2008.01.033

zbMATH Keywords

DNA deformationmacromolecular recognitionmolecular mechanicsprotein binding

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Biophysics (92C05) Biochemistry, molecular biology (92C40)

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Cited in

(9)

• Free energy analysis of protein-DNA binding: The EcoRI endonuclease-DNA complex
• Application of complex demodulation on bZIP and bHLH-PAS protein domains
• How conformational dynamics influences the protein search for targets on DNA
• Computational prediction of protein-DNA interactions based on wavelet transforms
• Salt dependent association of novel mutants of TATA-binding proteins to DNA: predictions from theory and experiments
• Energy fluctuations shape free energy of nonspecific biomolecular interactions
• scientific article; zbMATH DE number 2114997 (Why is no real title available?)
• Brownian dynamics simulation for protein folding and binding
• Computational Science - ICCS 2004

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