Computational method for inferring objective function of glycerol metabolism in Klebsiella pneumoniae

DOI10.1016/J.COMPBIOLCHEM.2008.06.005MaRDI QIDQ1004983zbMATH OpenOpenAlexWikidataFDO

Authors Zhaohua Gong, Chongyang Liu, Qingrui Zhang, Enmin Feng

Publication date 12 March 2009

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2008.06.005

zbMATH Keywords

genetic algorithmmetabolismrobustness analysisKlebsiella pneumoniae1,3-propanedioloptimization modelling

Mathematics Subject Classification ID

Approximation methods and heuristics in mathematical programming (90C59) Biochemistry, molecular biology (92C40)

Recommendations

• Infer objective function of glycerol metabolism in klebsiella pneumoniae basing on bilevel programming
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Cites work

• A globally convergent algorithm for a class of bilevel nonlinear programming problem
• A hybrid neural network approach to bilevel programming problems
• Global optimization of nonlinear bilevel programming problems
• Multicriteria approach to bilevel optimization
• Some properties of the bilevel programming problem

Cited in

(12)

• Analysis and application of biological robustness as performance index in microbial fermentation
• Modeling and identification of a nonlinear hybrid dynamical system in batch fermentation of glycerol
• Computational analysis of phenotypic space in heterologous polyketide biosynthesis -- applications to \textit{Escherichia coli}, \textit{Bacillus subtilis}, and \textit{Saccharomyces cerevisiae}
• Incorporation of flexible objectives and time-linked simulation with flux balance analysis
• Metabolic pathway analysis using a Nash equilibrium approach
• Mathematical modeling of bacterial metabolism
• Comparative and analysis of microbial genome-scale metabolic network model construction methods
• Infer objective function of glycerol metabolism in klebsiella pneumoniae basing on bilevel programming
• Complex metabolic network of glycerol fermentation by Klebsiella pneumoniae and its system identification via biological robustness
• Robust optimal control of a microbial batch culture process
• Capturing the essence of a metabolic network: a flux balance analysis approach
• A novel fractional microbial batch culture process and parameter identification

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