Interconnection networks for parallel molecular dynamics simulation based on Hamiltonian cubic symmetric topology

DOI10.1007/S10910-008-9412-5zbMATH Open1184.92063OpenAlexW2018723430MaRDI QIDQ1029754FDOQ1029754

Authors: Klavdija Kutnar, Urban Borštnik, Dragan Marušič, Dušanka Janežič 

Publication date: 13 July 2009

Published in: Journal of Mathematical Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10910-008-9412-5

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zbMATH Keywords

interconnection networkscommunication schedulingcubic symmetric graphs

Mathematics Subject Classification ID

Applications of graph theory (05C90) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cites Work

• Fast parallel algorithms for short-range molecular dynamics
• Title not available (Why is that?)
• Title not available (Why is that?)
• Lifting graph automorphisms by voltage assignments
• Title not available (Why is that?)
• Cubic symmetric graphs of order twice an odd prime-power
• Classifying cubic symmetric graphs of order \(8p\) or \(8p^2\)
• Action graphs and coverings
• Title not available (Why is that?)
• Comparing four classes of torus-based parallel architectures: network parameters and communication performance
• Parallel algorithms in computational science
• Two-dimensional regular \(d\)-meshes
• Efficient parallel algorithms for molecular dynamics simulations
• A note on \(N\)-body computations with cutoffs
• A canonical representation of trivalent hamiltonian graphs

Cited In (2)

• On the Hamiltonian cycle mapping onto 3-D torus interconnection network based on base-b reflected gray codes
• Combinatorial multinomial generators for colorings of 4D-hypercubes and their applications

Uses Software

• NAMD
• CHARMM
• MPI

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