Fast inference of individual admixture coefficients using geographic data

DOI10.1214/17-AOAS1106MaRDI QIDQ1647644zbMATH OpenOpenAlexWikidataFDO

Authors Kevin Caye, Flora Jay, Olivier Michel, Olivier Francois

Publication date 26 June 2018

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.aoas/1520564485

zbMATH Keywords

ancestry estimation algorithmsfast algorithmsgenotypic datageographic data

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• Cross-Validatory Estimation of the Number of Components in Factor and Principal Components Models
• Fast nonnegative matrix factorization: an active-set-like method and comparisons
• Genomic Control for Association Studies
• scientific article; zbMATH DE number 1206370 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 3048438 (Why is no real title available?)
• Laplacian Eigenmaps for Dimensionality Reduction and Data Representation
• Large-Scale Simultaneous Hypothesis Testing
• Learning the parts of objects by non-negative matrix factorization
• On the convergence of the block nonlinear Gauss-Seidel method under convex constraints
• Statistics for spatial data

Cited in

(3)

• Rate of decay in admixture linkage disequilibrium and its implication in gene mapping
• tess3r
• Understanding admixture fractions: theory and estimation of gene-flow

Describes a project that uses

Uses Software

• STRUCTURE
• LEA
• ANGSD
• fastSTRUCTURE
• AmiGO
• Frappe
• SpaceMix
• R

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