Optimal resource allocation enables mathematical exploration of microbial metabolic configurations

DOI10.1007/S00285-017-1118-5MaRDI QIDQ1679003zbMATH OpenOpenAlexWikidataFDO

Authors Laurent Tournier, Anne Goelzer, V. Fromion

Publication date 8 November 2017

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-017-1118-5

zbMATH Keywords

bacterial metabolic networkcentral carbon metabolismmonotone Boolean functionpartial Boolean functionresource balance analysissystems biology

Mathematics Subject Classification ID

Combinatorial optimization (90C27) Computational methods for problems pertaining to biology (92-08) General biology and biomathematics (92B05)

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Cites work

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• scientific article; zbMATH DE number 5852793 (Why is no real title available?)
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• Monotone Boolean functions
• On generating the irredundant conjunctive and disjunctive normal forms of monotone Boolean functions
• On the Complexity of Dualization of Monotone Disjunctive Normal Forms

Cited in

(9)

• Optimal allocation between nutrient uptake and growth in a microbial trichome
• Role of resource allocation and transport in emergence of cross-feeding in microbial consortia
• Learning Boolean controls in regulated metabolic networks: a case-study
• Cooperative metabolic resource allocation in spatially-structured systems
• Dynamic optimization of metabolic networks coupled with gene expression
• Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes
• Why optimal states recruit fewer reactions in metabolic networks
• An inverse problem framework for dynamic metabolic resource allocation problems in systems biology
• A mathematical model for optimal functional disruption of biochemical networks

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Uses Software

• JBool

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