Predicting the state of cysteines based on sequence information

DOI10.1016/J.JTBI.2010.09.002MaRDI QIDQ1733013zbMATH OpenOpenAlexWikidataFDO

Authors Xianqiang Yang

Publication date 26 March 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2010.09.002

zbMATH Keywords

\(F\)-score functionannotation informationevolution informationsupport vector machine

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20)

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Cites work

• Cooperativity of the oxidization of cysteines in globular proteins
• scientific article; zbMATH DE number 1332320 (Why is no real title available?)
• LIBLINEAR: a library for large linear classification
• Predicting the disulfide bonding state of cysteines with combinations of kernel machines
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Working set selection using second order information for training support vector machines

Cited in

(3)

• Predicting the disulfide bonding state of cysteines with combinations of kernel machines
• pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments
• Comparative structural modeling of cysteine and selenocysteine

Describes a project that uses

Uses Software

• Euk-PLoc
• LIBLINEAR
• Nuc-ploc

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