Improved haplotype assembly using Xor genotypes

DOI10.1016/J.JTBI.2012.01.003zbMATH Open1397.92462OpenAlexW2036853869WikidataQ51449706 ScholiaQ51449706MaRDI QIDQ1784030FDOQ1784030

Authors: Sayyed Rasoul Mousavi 

Publication date: 26 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2012.01.003

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zbMATH Keywords

SNPcomputational biologyhaplotype assemblysingle individual haplotypingXor genotype

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Analysis of algorithms and problem complexity (68Q25) Software, source code, etc. for problems pertaining to biology (92-04)

Cites Work

• Theory and Applications of Satisfiability Testing
• Title not available (Why is that?)
• Title not available (Why is that?)
• The complexity of theorem-proving procedures
• Title not available (Why is that?)
• A practical exact algorithm for the individual haplotyping problem MEC/GI
• Combinatorial Pattern Matching
• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Cited In (3)

• Data Rotation Improves Genomotyping Efficiency
• Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Uses Software

• UBCSAT
• HapCUT

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