Improved haplotype assembly using Xor genotypes

DOI10.1016/j.jtbi.2012.01.003zbMath1397.92462OpenAlexW2036853869WikidataQ51449706 ScholiaQ51449706MaRDI QIDQ1784030

Sayyed Rasoul Mousavi

Publication date: 26 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2012.01.003

zbMATH Keywords

computational biologySNPhaplotype assemblysingle individual haplotypingXor genotype

Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly

Uses Software

• UBCSAT
• HapCUT

Cites Work

• A practical exact algorithm for the individual haplotyping problem MEC/GI
• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information
• Combinatorial Pattern Matching
• The complexity of theorem-proving procedures
• Theory and Applications of Satisfiability Testing
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