Studies on the rules of -strand alignment in a protein -sheet structure

DOI10.1016/J.JTBI.2011.06.030MaRDI QIDQ1786068zbMATH OpenOpenAlexWikidataFDO

Authors Lei Zhang, Ning Zhang, Ji-Shou Ruan, Tao Zhang

Publication date 24 September 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2011.06.030

zbMATH Keywords

\(\beta\)-sheet formationamino acid pairsmachine learningprotein foldingsupport vector machine

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
• Research in Computational Molecular Biology
• scientific article; zbMATH DE number 2101405
• Amino acid pair- and triplet-wise groupings in the interior of \(\alpha\)-helical segments in proteins
• Prediction of the structural motifs of sandwich proteins

Cites work

• From contextual grammars to range concatenation grammars
• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
• Some remarks on protein attribute prediction and pseudo amino acid composition
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

Cited in

(4)

• Conformation and sequence evidence for two-fold symmetry in left-handed beta-helix fold
• Application of FTTP to alpha-helix or beta-strand motifs
• scientific article; zbMATH DE number 2101405 (Why is no real title available?)
• Research in Computational Molecular Biology

Describes a project that uses

Uses Software

• AFP-Pred
• PISCES
• LIBSVM
• iLoc-Euk

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