Studies on the rules of \(\beta\)-strand alignment in a protein \(\beta\)-sheet structure

DOI10.1016/j.jtbi.2011.06.030zbMath1397.92550OpenAlexW1976177827WikidataQ45961756 ScholiaQ45961756MaRDI QIDQ1786068

Ji-Shou Ruan, Lei Zhang, Tao Zhang, Ning Zhang

Publication date: 24 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.06.030

zbMATH Keywords

machine learningprotein foldingsupport vector machineamino acid pairs\(\beta\)-sheet formation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Uses Software

• LIBSVM
• PISCES
• iLoc-Euk
• AFP-Pred

Cites Work

• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• From Contextual Grammars to Range Concatenation Grammars

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