A remarkable nonlinear invariant for evolution with heterogeneous rates

DOI10.1016/0025-5564(95)00108-5MaRDI QIDQ1914213zbMATH OpenOpenAlexWikidataFDO

Authors Vincent Ferretti, David Sankoff

Publication date 5 June 1996

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0025-5564(95)00108-5

zbMATH Keywords

cubic function of 4-typle occurrence frequenciesDNA-evolutionJukes-Cantor model of evolutionnonlinear polynomial invariantsphylogenyprotein sequence evolutiontwo-rate problem

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Recommendations

• Phylogenetic invariants for the general Markov model of sequence mutation
• Invariants of some probability models used in phylogenetic inference
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Cites work

• Construction of linear invariants in phylogenetic inference
• Estimation of evolutionary distances between homologous nucleotide sequences.
• Fourier calculus on evolutionary trees
• scientific article; zbMATH DE number 3941661 (Why is no real title available?)
• scientific article; zbMATH DE number 638938 (Why is no real title available?)
• Invariants of phylogenies in a simple case with discrete states
• Invariants of some probability models used in phylogenetic inference
• Necessary and sufficient conditions for the existence of linear invariants in phylogenetic inference
• Necessary conditions for the method of inferring phylogeny by linear invariants
• Recovering a tree from the leaf colourations it generates under a Markov model
• The empirical discovery of phylogenetic invariants

Cited in

(5)

• Phylogenetic invariants for the general Markov model of sequence mutation
• Determining the number and structure of phylogenetic invariants.
• Analysis of top-swap shuffling for genome rearrangements
• A variational characterization of rate-independent evolution
• A discrete variational principle for rate-independent evolution

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