The empirical discovery of phylogenetic invariants

DOI10.2307/1427653MaRDI QIDQ5286945zbMATH OpenOpenAlexFDO

Authors Vincent Ferretti, David Sankoff

Publication date 20 September 1993

Published in Advances in Applied Probability (Search for Journal in Brave)

Full work available at URL https://doi.org/10.2307/1427653

zbMATH Keywords

DNA sequencesinvariancesymbolic computationevolutionary treequadratic invariants\(k\)-state Markov modeledge-length configurationsJukes-Cantor type of Markov matrixsmallest algebraically independent set of invariantsunrooted binary trees with four terminals

Mathematics Subject Classification ID

Problems related to evolution (92D15) Symbolic computation and algebraic computation (68W30) Continuous-time Markov processes on discrete state spaces (60J27)

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Cited in

(17)

• Determining the number and structure of phylogenetic invariants.
• Using invariants for phylogenetic tree construction
• Identical inferences about correlated evolution arise from ancestral state reconstruction and independent contrasts
• Algebraic tools for evolutionary biology
• A remarkable nonlinear invariant for evolution with heterogeneous rates
• A Fourier inversion formula for evolutionary trees
• Relevant phylogenetic invariants of evolutionary models
• Invariants of phylogenies in a simple case with discrete states
• Phylogenetic invariants for the general Markov model of sequence mutation
• Markov invariants and the isotropy subgroup of a quartet tree
• Markov invariants, plethysms, and phylogenetics
• Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants
• Dimensional reduction for the general Markov model on phylogenetic trees
• scientific article; zbMATH DE number 2220791 (Why is no real title available?)
• Phylogenetic ideals and varieties for the general Markov model
• Topics on phylogenetic algebraic geometry
• Phylogenetic mixtures and linear invariants for equal input models

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