Fast neighbor lists for adaptive-resolution particle simulations

DOI10.1016/J.CPC.2012.01.003zbMATH Open1264.65011OpenAlexW2067015954MaRDI QIDQ1948865FDOQ1948865

Authors: Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini 

Publication date: 25 April 2013

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://www.zora.uzh.ch/id/eprint/79219/1/pub_b%C3%BCk%C3%BC.pdf

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zbMATH Keywords

numerical examplesalgorithmparticle methodsadaptive-resolution simulationscell listsmultiresolution simulationsneighbor listsVerlet lists

Mathematics Subject Classification ID

Stochastic particle methods (65C35)

Cites Work

• PPM -- a highly efficient parallel particle-mesh library for the simulation of continuum systems
• Quicksort
• Title not available (Why is that?)
• Title not available (Why is that?)
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• Multidimensional binary search trees used for associative searching
• A Lagrangian particle level set method
• MULTISCALE FLOW SIMULATIONS USING PARTICLES
• Vortex methods with spatially varying cores
• Title not available (Why is that?)
• Convergence of a Variable Blob Vortex Method for the Euler and Navier–Stokes Equations
• A Lagrangian particle method for reaction-diffusion systems on deforming surfaces
• Accurate and efficient methods for modeling colloidal mixtures in an explicit solvent using molecular dynamics
• Discretization correction of general integral PSE operators for particle methods
• Efficiency of linked cell algorithms
• The priority R-tree

Cited In (6)

• Faster neighbour list generation using a novel lattice vector representation
• Particle-based adaptive coupling of 3D and 2D fluid flow models
• An efficient linked list for molecular simulations on a spherical surface
• Improving Linked-Lists Using Tree Search Algorithms for Neighbor Finding in Variable-Resolution Smoothed Particle Hydrodynamics
• A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations
• A new multi-resolution parallel framework for SPH

Uses Software

• PPM
• PETSc
• TREESPH
• Quicksort

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