Fast neighbor lists for adaptive-resolution particle simulations

DOI10.1016/J.CPC.2012.01.003MaRDI QIDQ1948865zbMATHOpenAlexFDO

Authors Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini

Publication date 25 April 2013

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://www.zora.uzh.ch/id/eprint/79219/1/pub_b%C3%BCk%C3%BC.pdf

zbMATH Keywords

numerical examplesalgorithmparticle methodsadaptive-resolution simulationscell listsmultiresolution simulationsneighbor listsVerlet lists

Mathematics Subject Classification ID

Stochastic particle methods (65C35)

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Cites work

• scientific article; zbMATH DE number 1688358 (Why is no real title available?)
• scientific article; zbMATH DE number 41859 (Why is no real title available?)
• scientific article; zbMATH DE number 46777 (Why is no real title available?)
• scientific article; zbMATH DE number 1302349 (Why is no real title available?)
• A Lagrangian particle level set method
• A Lagrangian particle method for reaction-diffusion systems on deforming surfaces
• Accurate and efficient methods for modeling colloidal mixtures in an explicit solvent using molecular dynamics
• Convergence of a Variable Blob Vortex Method for the Euler and Navier–Stokes Equations
• Discretization correction of general integral PSE operators for particle methods
• Efficiency of linked cell algorithms
• MULTISCALE FLOW SIMULATIONS USING PARTICLES
• Multidimensional binary search trees used for associative searching
• PPM -- a highly efficient parallel particle-mesh library for the simulation of continuum systems
• Quicksort
• The priority R-tree: a practically efficient and worst-case optimal R-tree
• Vortex methods with spatially varying cores

Cited in

(6)

• Particle-based adaptive coupling of 3D and 2D fluid flow models
• An efficient linked list for molecular simulations on a spherical surface
• A new multi-resolution parallel framework for SPH
• Improving linked-lists using tree search algorithms for neighbor finding in variable-resolution smoothed particle hydrodynamics
• A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations
• Faster neighbour list generation using a novel lattice vector representation

Describes a project that uses

Uses Software

• PPM
• PETSc
• TREESPH
• Quicksort

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