Myoglobin ligand gate mechanism analysis by a novel 3D visualization technique

DOI10.1007/S10910-019-01021-4MaRDI QIDQ2000926zbMATH OpenOpenAlexWikidataFDO

Authors Yanzhen Hou, Antti J. Niemi, Xubiao Peng, Nevena Ilieva

Publication date 1 July 2019

Published in Journal of Mathematical Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10910-019-01021-4

zbMATH Keywords

projectionsprotein structurestructure analysisstructure refinementcoordinate framesside chain orientation

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Recommendations

• Computation and visualization of protein topology graphs including ligand information
• Visualizing the dual space of biological molecules
• Intrinsic protein geometry with application to non-proline \textit{cis} peptide planes
• Critical analysis of amino acids and polypeptides geometry
• On statistically meaningful geometric properties of digital three-dimensional structures of proteins

Cites work

• scientific article; zbMATH DE number 3321872 (Why is no real title available?)
• Intrinsic protein geometry with application to non-proline \textit{cis} peptide planes

Cited in

(1)

• Ultrametric theory of conformational dynamics of protein molecules in a functional state and the description of experiments on the kinetics of CO binding to myoglobin

Describes a project that uses

Uses Software

• PyMOL
• Jmol
• VMD

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