Myoglobin ligand gate mechanism analysis by a novel 3D visualization technique

DOI10.1007/S10910-019-01021-4zbMATH Open1416.92131OpenAlexW2923074946WikidataQ128183990 ScholiaQ128183990MaRDI QIDQ2000926FDOQ2000926

Antti J. Niemi, Yanzhen Hou, Xubiao Peng, Nevena Ilieva

Publication date: 1 July 2019

Published in: Journal of Mathematical Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10910-019-01021-4

Recommendations

• Computation and visualization of protein topology graphs including ligand information
• Visualizing the dual space of biological molecules
• Intrinsic protein geometry with application to non-proline \textit{cis} peptide planes
• Critical analysis of amino acids and polypeptides geometry
• On statistically meaningful geometric properties of digital three-dimensional structures of proteins

zbMATH Keywords

projectionsprotein structurestructure analysisstructure refinementcoordinate framesside chain orientation

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

• Title not available (Why is that?)
• Intrinsic protein geometry with application to non-proline \textit{cis} peptide planes

Cited In (1)

• Ultrametric theory of conformational dynamics of protein molecules in a functional state and the description of experiments on the kinetics of CO binding to myoglobin

Uses Software

• PyMOL
• Jmol
• VMD

This page was built for publication: Myoglobin ligand gate mechanism analysis by a novel 3D visualization technique

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2000926)