Visualizing the dual space of biological molecules

DOI10.1016/J.COMPBIOLCHEM.2006.01.004MaRDI QIDQ2500386zbMATH OpenOpenAlexWikidataFDO

Authors John Eargle, Zaida Luthey-Schulten

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2006.01.004

zbMATH Keywords

Delaunay triangulationProtein/tRNA interfaceTessellation

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

Recommendations

• Computational Science and Its Applications – ICCSA 2004
• Visual analysis of biomolecular surfaces
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• scientific article; zbMATH DE number 1501068
• Triangulating the surface of a molecule

Cited in

(4)

• Myoglobin ligand gate mechanism analysis by a novel 3D visualization technique
• Computation and visualization of protein topology graphs including ligand information
• scientific article; zbMATH DE number 5262771 (Why is no real title available?)
• Identification of sequence-specific tertiary packing motifs in protein structures using Delaunay tessellation

Describes a project that uses

Uses Software

• VMD
• RasMol
• MOE
• Chimera

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