Fitting thermodynamic-based models: incorporating parameter sensitivity improves the performance of an evolutionary algorithm

DOI10.1016/J.MBS.2021.108716MaRDI QIDQ2066475zbMATH OpenOpenAlexFDO

Authors Michael J. Gaiewski, Robert A. Drewell, Jacqueline Dresch

Publication date 14 January 2022

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2021.108716

zbMATH Keywords

evolutionary algorithmparameter estimationsensitivity analysisthermodynamic-based modeltranscription

Mathematics Subject Classification ID

Evolutionary algorithms, genetic algorithms (computational aspects) (68W50) Biochemistry, molecular biology (92C40)

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Cites work

• A methodology for performing global uncertainty and sensitivity analysis in systems biology
• Advances in Artificial Intelligence – SBIA 2004
• Gposolver: a Matlab/C++ toolbox for global polynomial optimization
• Two-layer mathematical modeling of gene expression: incorporating DNA-level information and system dynamics

Cited in

(4)

• Global optimization using Gaussian processes to estimate biological parameters from image data
• Using an improved bee memory differential evolution algorithm for parameter estimation to simulate biochemical pathways
• Evolutionary estimation of parameters in computational models of thymocyte dynamics
• Evolutionary multi-objective optimization and Pareto-frontal uncertainty quantification of interatomic forcefields for thermal conductivity simulations

Describes a project that uses

Uses Software

• Matlab
• SIGOA
• Optimization Toolbox

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