Viral capsid nanoindentation simulations using octree-type data structures

DOI10.1016/J.MATCOM.2022.06.017MaRDI QIDQ2079320zbMATH OpenOpenAlexFDO

Authors Jorge López-Ruiz, Salvador Botello-Rionda, Rafael Herrera-Guzmán, Mauricio Carrillo-Tripp

Publication date 29 September 2022

Published in Mathematics and Computers in Simulation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.matcom.2022.06.017

zbMATH Keywords

finite element methodoctreemeshnanoindentationviral capsid

Mathematics Subject Classification ID

Biology and other natural sciences (92-XX) Mechanics of deformable solids (74-XX)

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Cites work

• scientific article; zbMATH DE number 2223421 (Why is no real title available?)
• 3D finite element meshing from imaging data
• A meshfree method for mechanics and conformational change of proteins and their assemblies
• A smoothed finite element method for octree-based polyhedral meshes with large number of hanging nodes and irregular elements
• Generation of viscous grids at ridges and corners
• Patient-specific geometry modeling and mesh generation for simulating obstructive sleep apnea syndrome cases by maxillomandibular advancement
• Quality mesh generation for molecular skin surfaces using restricted union of balls

Cited in

(1)

• A three-dimensional discrete model for approximating the deformation of a viral capsid subjected to lying over a flat surface in the static and time-dependent case

Describes a project that uses

Uses Software

• VMD
• LBIE
• Chimera
• FEAPpv

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