Cited in
(84)- Computation of real-valued basis functions which transform as irreducible representations of the polyhedral groups
- Manifold learning with arbitrary norms
- GANM: A protein-ligand docking approach based on genetic algorithm and normal modes
- Nonuniform Fourier transforms for rigid-body and multidimensional rotational correlations
- Molecular dynamics study on the ligand recognition by tandem SH3 domains of p47phox, regulating NADPH oxidase activity
- Implication of crystal water molecules in inhibitor binding at ALR2 active site
- Revealing - 1 programmed ribosomal frameshifting mechanisms by single-molecule techniques and computational methods
- An overset grid method for integration of fully 3D fluid dynamics and geophysics fluid dynamics models to simulate multiphysics coastal ocean flows
- In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
- Topological methods in data analysis and visualization IV. Theory, algorithms, and applications. Selected papers based on the presentations at the TopoInVis workshop, Annweiler, Germany, 2015
- SWAN
- CaSPER
- GANM
- EMan
- MEGA
- AutoDock
- AutoDock Vina
- Situs
- PyMOL
- BiGGER
- Halfedge Data Structures
- F2Dock
- VADAR
- ZDOCK
- StructBio
- PFCorr
- SYBYL
- DeepVS
- ESyPred3D
- MOAB
- HYCOM
- GOAHEAD
- Cormix
- OVERFLOW
- BioSG
- FPV
- SIFOM-FVCOM
- RasMol
- VENLO
- Voreen
- VMD
- WEAVE
- EMPIAR
- NNScore
- MOE
- ADAPT
- KnotProt
- MScomplex
- XMIPP
- RELION
- ACPYPE
- SPARX
- pomegranate
- PROMOTIF
- MODELLER
- OpenSCAD
- ASPIRE
- cisTEM
- IMAGIC
- PyRx
- DelPhiForce
- cryoSPARC
- crYOLO
- CryoDRGN
- Computational and visualization techniques for structural bioinformatics using Chimera
- Efficient use of semidefinite programming for selection of rotamers in protein conformations
- Analysis of the interaction of the Eg5 Loop5 with the nucleotide site
- Visualizing the dual space of biological molecules
- Visualization in Medicine and Life Sciences II. Progress and New Challenges. Selected papers based on the presentations at the second international workshop, VMLS, Bremerhaven, Germany, June 22--24, 2009
- An adaptive discretization of incompressible flow using a multitude of moving Cartesian grids
- Genuinely multi-dimensional explicit and implicit generalized Shapiro filters for weather forecasting, computational fluid dynamics and aeroacoustics
- Using computational approaches to study dengue virus capsid assembly
- Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes
- A common lines approach for \textit{ab initio} modeling of cyclically symmetric molecules
- Efficient software for programmable visual analysis using Morse-Smale complexes
- Viral capsid nanoindentation simulations using octree-type data structures
- A grid-based genetic algorithm combined with an adaptive simulated annealing for protein structure prediction
- Constraint programming in structural bioinformatics
- Enzymatic reaction sites on a plane formed with four exon-junctions
- Exploration of synthetic multifunctional amides as new therapeutic agents for Alzheimer's disease through enzyme inhibition, chemoinformatic properties, molecular docking and dynamic simulation insights
- Immunoinformatics and molecular docking studies reveal potential epitope-based peptide vaccine against DENV-NS3 protein
- Iterative hybrid regularization for extremely noisy full models in single particle analysis
- Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete \textit{Mucor mucedo}
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
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