Constraint programming in structural bioinformatics

DOI10.1007/S10601-007-9036-6MaRDI QIDQ941676zbMATH OpenOpenAlexWikidataFDO

Authors Pedro Barahona, Ludwig Krippahl

Publication date 2 September 2008

Published in Constraints (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10601-007-9036-6

zbMATH Keywords

Protein structure determinationProtein docking

Mathematics Subject Classification ID

Computing methodologies and applications (68U99) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Applying Constraint Programming to Rigid Body Protein Docking
• Bioinformatics and constraints
• PSICO: Solving protein structures with constraint programming and optimization
• A constraint based structure description language for biosequences
• scientific article; zbMATH DE number 4051404

Cites work

• A constraint-based approach to fast and exact structure prediction in three-dimensional protein models
• Advances in Artificial Intelligence – SBIA 2004
• Applying Constraint Programming to Rigid Body Protein Docking
• PSICO: Solving protein structures with constraint programming and optimization
• Recent Advances in Constraints

Cited in

(9)

• Online control of enumeration strategies via bat algorithm and black hole optimization
• Bioinformatics and constraints
• Applying Constraint Programming to Rigid Body Protein Docking
• An algorithm for computing the restriction s|caffold assignment problem in computational biology
• PSICO: Solving protein structures with constraint programming and optimization
• Solving bioinformatics problems by soft computing techniques: protein structure comparison as example
• A constraint based structure description language for biosequences
• CLP-based protein fragment assembly
• Dashed strings for string constraint solving

Describes a project that uses

Uses Software

• BiGGER
• Chimera
• BIOCHAM
• CaSPER
• DYANA

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