A constraint-based approach to fast and exact structure prediction in three-dimensional protein models

DOI10.1007/s10601-006-6848-8zbMath1103.68959OpenAlexW2048583196MaRDI QIDQ850456

Rolf Backofen, Sebastian Will

Publication date: 3 November 2006

Published in: Constraints (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10601-006-6848-8

zbMATH Keywords

constraint programmingprotein structure predictionFace-Centered Cubic latticeHP-model

Mathematics Subject Classification ID

Related Items (5)

Mathematical programming in computational biology: an annotated bibliography ⋮ Unraveling the beautiful complexity of simple lattice model polymers and proteins using Wang-Landau sampling ⋮ Constraint programming in structural bioinformatics ⋮ CLP-based protein fragment assembly ⋮ An efficient approach for solving the HP protein folding problem based on UEGO

Uses Software

• Oz

Cites Work

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• A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC)
• Excluding symmetries in constraint-based search
• A Sufficient Condition for Backtrack-Free Search
• Self-avoiding walks on the simple cubic lattice
• The protein structure prediction problem: A constraint optimization approach using a new lower bound

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