A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC)

DOI10.1016/S1570-8667(03)00076-5zbMATH Open1114.92025MaRDI QIDQ876713FDOQ876713

Authors: Rolf Backofen 

Publication date: 26 April 2007

Published in: Journal of Discrete Algorithms (Search for Journal in Brave)

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zbMATH Keywords

branch-and-boundprotein foldinglattice proteinsHP-modelface-centered-cubic-lattice (FCC)

Mathematics Subject Classification ID

Polyhedral combinatorics, branch-and-bound, branch-and-cut (90C57) Biochemistry, molecular biology (92C40) Dynamic programming (90C39) Computational methods for problems pertaining to biology (92-08)

Cites Work

• The antipode construction for sphere packings
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Cited In (5)

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• Stochastic protein folding simulation in the three-dimensional HP-model
• A constraint-based approach to fast and exact structure prediction in three-dimensional protein models

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