Stochastic protein folding simulation in the three-dimensional HP-model
From MaRDI portal
Publication:1004918
DOI10.1016/j.compbiolchem.2008.03.004zbMath1159.92016OpenAlexW2012217649WikidataQ51878889 ScholiaQ51878889MaRDI QIDQ1004918
K. Steinhöfel, A. Skaliotis, Andreas A. Albrecht
Publication date: 12 March 2009
Published in: Computational Biology and Chemistry (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2008.03.004
Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)
Related Items (3)
Population-based local search for protein folding simulation in the MJ energy model and cubic lattices ⋮ Analysis of local search landscapes for \(k\)-SAT instances ⋮ Stochastic protein folding simulation in the three-dimensional HP-model
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Optimization by Simulated Annealing
- Thermodynamics of proteins: Fast folders and sharp transitions
- A new class of hybrid global optimization algorithms for peptide structure prediction: integrated hybrids
- Thermodynamical approach to the travelling salesman problem: An efficient simulation algorithm
- Hydrophobic collapse in (in silico) protein folding
- A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC)
- Stochastic protein folding simulation in the three-dimensional HP-model
- Rough large deviation estimates for simulated annealing: Application to exponential schedules
- A limit theorem for a class of inhomogeneous Markov processes
- Simulated annealing with time-dependent energy function via Sobolev inequalities
- Protein conformation of a lattice model using tabu search
- Convergence and first hitting time of simulated annealing algorithms for continuous global optimization
- On the convergence of generalized hill climbing algorithms
- Approximate protein folding in the HP side chain model on extended cubic lattices
- Long proteins with unique optimal foldings in the H-P model
- Sufficient and necessary condition for the convergence of stochastic approximation algorithms
- A proof of the Kepler conjecture
- A stopping criterion for logarithmic simulated annealing
- Combinatorial Landscapes
- Efficiency of Local Search with Multiple Local Optima
- Opportunities for Combinatorial Optimization in Computational Biology
- Cooling Schedules for Optimal Annealing
- Molecular Modeling of Proteins and Mathematical Prediction of Protein Structure
- Equation of State Calculations by Fast Computing Machines
- Automata, Languages and Programming
- On the complexity of string folding
This page was built for publication: Stochastic protein folding simulation in the three-dimensional HP-model